Abstract: this paper based on the regional level and analyzes the evolution characters and countermeasures of regional marine industrial structure in China from 2001 to 2012. The result shows that the regional Marine industrial structures have sharp difference between each other and their development models are incompatible. At the meantime, the analysis based on the sustainable development and resources endowments indicate there have different degrees of unreasonable marine industrial structures. Finally, this paper divides the 11 coastal regions into five areas and puts forward optimization strategies for marine industrial structures by adjusting measures to local conditions.